Skip to main content
Fig. 3 | BMC Bioinformatics

Fig. 3

From: affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling

Fig. 3

Two of the three mosaic events detected by MAD of Dataset A after being pre-processed by affy2sv. The plots show two mosaic events found by MAD after the pre-process Dataset A with affy2sv Each plot represents the whole chromosome where the mosaic event is located. The black dots show the value of the LRR for each single SNP while the red points show the value of the BAF; placing at the top the ones corresponding to AA allele (with a value close to 1), at the middle the ones corresponding to AB allele (with a value around 0.5) and at the bottom the ones corresponding to BB allele (with a value close to 0). Part A shows a 33 Mb mosaic deletion at terminal 8p. Part B shows a 25 Mb mosaic duplication at terminal 18q. The presence of both events in the same sample (from Toronto general population) indicated that the individual carries an unbalanced chromosomal translocation (8p; 18q) in a proportion of cells

Back to article page