TY - JOUR AU - Eubank, S. AU - Guclu, H. AU - Kumar, V. S. A. AU - Marathe, M. V. AU - Srinivasan, A. AU - Toroczkai, Z. PY - 2004 DA - 2004// TI - Modelling disease outbreaks in realistic urban social networks JO - Nature VL - 429 UR - https://doi.org/10.1038/nature02541 DO - 10.1038/nature02541 ID - Eubank2004 ER - TY - JOUR AU - Ferguson, N. M. AU - Cummings, D. A. T. AU - Cauchemez, S. AU - Fraser, C. AU - Riley, S. AU - Meeyai, A. PY - 2005 DA - 2005// TI - Strategies for containing an emerging influenza pandemic in Southeast Asia JO - Nature VL - 437 UR - https://doi.org/10.1038/nature04017 DO - 10.1038/nature04017 ID - Ferguson2005 ER - TY - JOUR AU - Germann, T. C. AU - Kadau, K. AU - Longini Jr, I. M. AU - Macken, C. A. PY - 2006 DA - 2006// TI - Mitigation strategies for pandemic influenza in the United States JO - Proc Natl Acad Sci VL - 103 UR - https://doi.org/10.1073/pnas.0601266103 DO - 10.1073/pnas.0601266103 ID - Germann2006 ER - TY - JOUR AU - Degli Atti, M. L. C. AU - Merler, S. AU - Rizzo, C. AU - Ajelli, M. AU - Massari, M. AU - Manfredi, P. PY - 2008 DA - 2008// TI - Mitigation measures for pandemic influenza in Italy: an individual based model considering different scenarios JO - PLoS ONE VL - 3 UR - https://doi.org/10.1371/journal.pone.0001790 DO - 10.1371/journal.pone.0001790 ID - Degli Atti2008 ER - TY - JOUR AU - Das, T. K. AU - Savachkin, A. A. AU - Zhu, Y. PY - 2008 DA - 2008// TI - A large-scale simulation model of pandemic influenza outbreaks for development of dynamic mitigation strategies JO - IIE Trans VL - 40 UR - https://doi.org/10.1080/07408170802165856 DO - 10.1080/07408170802165856 ID - Das2008 ER - TY - JOUR AU - Chao, D. L. AU - Halloran, M. E. AU - Obenchain, V. J. AU - Longini Jr, I. M. PY - 2010 DA - 2010// TI - FluTE, a publicly available stochastic influenza epidemic simulation model JO - PLoS Comp Biol VL - 6 UR - https://doi.org/10.1371/journal.pcbi.1000656 DO - 10.1371/journal.pcbi.1000656 ID - Chao2010 ER - TY - JOUR AU - Roche, B. AU - Drake, J. M. AU - Rohani, P. PY - 2011 DA - 2011// TI - An agent-based model to study the epidemiological and evolutionary dynamics of influenza viruses JO - BMC Bioinformatics VL - 12 UR - https://doi.org/10.1186/1471-2105-12-87 DO - 10.1186/1471-2105-12-87 ID - Roche2011 ER - TY - JOUR AU - Laskowski, M. AU - Demianyk, B. C. AU - Witt, J. AU - Mukhi, S. N. AU - Friesen, M. R. AU - McLeod, R. D. PY - 2011 DA - 2011// TI - Agent-based modeling of the spread of influenza-like illness in an emergency department: a simulation study JO - IEEE Trans Inf Technol Biomed VL - 15 UR - https://doi.org/10.1109/TITB.2011.2163414 DO - 10.1109/TITB.2011.2163414 ID - Laskowski2011 ER - TY - JOUR AU - Aleman, D. M. AU - Wibisono, T. G. AU - Schwartz, B. PY - 2011 DA - 2011// TI - A nonhomogeneous agent-based simulation approach to modeling the spread of disease in a pandemic outbreak JO - Interfaces VL - 41 UR - https://doi.org/10.1287/inte.1100.0550 DO - 10.1287/inte.1100.0550 ID - Aleman2011 ER - TY - JOUR AU - Grefenstette, J. J. AU - Brown, S. T. AU - Rosenfeld, R. AU - DePasse, J. AU - Stone, N. T. AU - Cooley, P. C. PY - 2013 DA - 2013// TI - FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations JO - BMC Public Health VL - 13 UR - https://doi.org/10.1186/1471-2458-13-940 DO - 10.1186/1471-2458-13-940 ID - Grefenstette2013 ER - TY - JOUR AU - Halloran, M. E. AU - Ferguson, N. M. AU - Eubank, S. AU - Longini, I. M. AU - Cummings, D. A. AU - Lewis, B. PY - 2008 DA - 2008// TI - Modeling targeted layered containment of an influenza pandemic in the United States JO - Proc Natl Acad Sci VL - 105 UR - https://doi.org/10.1073/pnas.0706849105 DO - 10.1073/pnas.0706849105 ID - Halloran2008 ER - TY - JOUR AU - Willem, L. AU - Stijven, S. AU - Vladislavleva, E. AU - Broeckhove, J. AU - Beutels, P. AU - Hens, N. PY - 2014 DA - 2014// TI - Active learning to understand infectious disease models and improve policy making JO - PLoS Comput Biol VL - 10 UR - https://doi.org/10.1371/journal.pcbi.1003563 DO - 10.1371/journal.pcbi.1003563 ID - Willem2014 ER - TY - STD TI - Drepper U. What every programmer should know about memory. http://www.akkadia.org/drepper/cpumemory.pdf. ID - ref13 ER - TY - JOUR AU - Giles, M. AU - Reguly, I. PY - 2014 DA - 2014// TI - Trends in high-performance computing for engineering calculations JO - Phil Trans R Soc A VL - 372 UR - https://doi.org/10.1098/rsta.2013.0319 DO - 10.1098/rsta.2013.0319 ID - Giles2014 ER - TY - JOUR AU - Giles, M. B. AU - Mudalige, G. R. AU - Sharif, Z. AU - Markall, G. AU - Kelly, P. H. PY - 2011 DA - 2011// TI - Performance analysis and optimization of the OP2 framework on many-core architectures JO - SIGMETRICS Perform. Eval. Rev VL - 38 UR - https://doi.org/10.1145/1964218.1964221 DO - 10.1145/1964218.1964221 ID - Giles2011 ER - TY - JOUR AU - Sutter, H. PY - 2005 DA - 2005// TI - The free lunch is over: A fundamental turn toward concurrency in software JO - Dr. Dobb s J VL - 30 ID - Sutter2005 ER - TY - JOUR AU - Sutter, H. AU - Larus, J. PY - 2005 DA - 2005// TI - Software and the concurrency revolution JO - Queue VL - 3 UR - https://doi.org/10.1145/1095408.1095421 DO - 10.1145/1095408.1095421 ID - Sutter2005 ER - TY - JOUR AU - Hayes, B. PY - 2001 DA - 2001// TI - Randomness as a resource JO - Am Sci VL - 89 UR - https://doi.org/10.1511/2001.28.3336 DO - 10.1511/2001.28.3336 ID - Hayes2001 ER - TY - JOUR AU - Bauke, H. AU - Mertens, S. PY - 2007 DA - 2007// TI - Random numbers for large-scale distributed Monte Carlo simulations JO - Phys Rev E VL - 75 UR - https://doi.org/10.1103/PhysRevE.75.066701 DO - 10.1103/PhysRevE.75.066701 ID - Bauke2007 ER - TY - JOUR AU - Mossong, J. AU - Hens, N. AU - Jit, M. AU - Beutels, P. AU - Auranen, K. AU - Mikolajczyk, R. PY - 2008 DA - 2008// TI - Social contacts and mixing patterns relevant to the spread of infectious diseases JO - PLoS Med VL - 5 UR - https://doi.org/10.1371/journal.pmed.0050074 DO - 10.1371/journal.pmed.0050074 ID - Mossong2008 ER - TY - JOUR AU - Hens, N. AU - Ayele, G. M. AU - Goeyvaerts, N. AU - Aerts, M. AU - Mossong, J. AU - Edmunds, J. W. PY - 2009 DA - 2009// TI - Estimating the impact of school closure on social mixing behaviour and the transmission of close contact infections in eight European countries JO - BMC Infect Dis VL - 9 UR - https://doi.org/10.1186/1471-2334-9-187 DO - 10.1186/1471-2334-9-187 ID - Hens2009 ER - TY - JOUR AU - Willem, L. AU - Van Kerckhove, K. AU - Chao, D. L. AU - Hens, N. AU - Beutels, P. PY - 2012 DA - 2012// TI - A nice day for an infection? Weather conditions and social contact patterns relevant to influenza transmission JO - PloS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0048695 DO - 10.1371/journal.pone.0048695 ID - Willem2012 ER - TY - STD TI - RTI International: 2010 RTIU.S. synthetic population ver. 1.0. 2014 Downloaded from http://www.epimodels.org. ID - ref23 ER - TY - STD TI - Wheaton W. 2010 U.S. synthetic population quick start guide. RTI international. 2014. Retrieved from http://www.epimodels.org. ID - ref24 ER - TY - BOOK AU - Chapman, B. AU - Jost, G. AU - Van Der Pas, R. PY - 2008 DA - 2008// TI - Using OpenMP: Portable Shared Memory Parallel Programming vol. 10 PB - MIT Press CY - Massachusetts, USA ID - Chapman2008 ER - TY - STD TI - Bauke H, Brown WE, Fischler M, Kowalkowski J, Paterno M, Knuth DE, Press WH, Teukolsky SA, Vetterling WT, Flannery BP, et al. Tina‘s random number generator library. 2011. Retrieved from http://numbercrunch.de/trng/. UR - http://numbercrunch.de/trng/ ID - ref26 ER - TY - STD TI - Google: C++ testing framework. 2014. Retrived from http://code.google.com/p/googletest/. UR - http://code.google.com/p/googletest/ ID - ref27 ER - TY - BOOK AU - Smart, J. PY - 2011 DA - 2011// TI - Jenkins: the definitive guide PB - O’Reilly Media CY - Sebastopol, California ID - Smart2011 ER - TY - STD TI - Tclap. The templetized C++ command line parser library. 2014. Retrieved from http://www.tclap.sourceforge.net. ID - ref29 ER - TY - CHAP AU - Fialho, L. AU - Browne, J. PY - 2014 DA - 2014// TI - Framework and modular infrastructure for automation of architectural adaptation and performance optimization for HPC systems BT - Supercomputing PB - Springer CY - Cham, Switzerland ID - Fialho2014 ER - TY - JOUR AU - Rane, A. AU - Browne, J. PY - 2014 DA - 2014// TI - Enhancing performance optimization of multicore/multichip nodes with data structure metrics JO - ACM Trans Par Comput VL - 1 ID - Rane2014 ER -