From: BitMapper: an efficient all-mapper based on bit-vector computing
Mapper | Time | Benchmark category | Â | Â | Â | Â | Â | Â | Â | Â | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | [min:sec] | All[%] | All-best[%] | Any-best[%] | |||||||||
Bowtie2 a | 0:18 | 90.18 | 97.68 | 96.60 | 92.25 | 95.87 | 96.46 | 96.14 | 94.48 | 99.26 | 100.00 | 99.49 | 97.51 |
 |  |  | 78.95 | 52.71 | 21.13 |  | 93.69 | 92.76 | 92.27 |  | 96.63 | 96.27 | 95.38 |
BWA b | 0:49 | 92.28 | 100.00 | 99.81 | 96.75 | 98.84 | 100.00 | 99.80 | 99.40 | 98.89 | 100.00 | 99.86 | 99.50 |
 |  |  | 79.47 | 44.91 | 16.65 |  | 93.61 | 78.42 | 70.67 |  | 93.70 | 78.61 | 71.17 |
GEM c | 0:14 | 92.75 | 98.25 | 97.65 | 95.69 | 98.15 | 98.27 | 98.21 | 97.97 | 99.36 | 99.42 | 99.42 | 99.24 |
 |  |  | 88.44 | 67.06 | 33.44 |  | 98.11 | 96.87 | 95.87 |  | 99.42 | 98.74 | 97.33 |
Bowtie 2 | — | 99.73 | 100.00 | 100.00 | 100.00 | 99.97 | 100.00 | 100.00 | 100.00 | 99.97 | 100.00 | 100.00 | 100.00 |
 |  |  | 99.96 | 99.53 | 95.45 |  | 99.95 | 99.67 | 97.89 |  | 99.95 | 99.67 | 97.89 |
BWA | 40:32 | 97.80 | 100.00 | 99.97 | 99.62 | 98.95 | 100.00 | 99.97 | 99.62 | 98.95 | 100.00 | 99.97 | 99.62 |
 |  |  | 94.26 | 83.53 | 75.30 |  | 93.82 | 79.03 | 70.93 |  | 93.82 | 79.16 | 71.17 |
GEM | 3:15 | 96.02 | 98.25 | 98.24 | 98.09 | 98.15 | 98.27 | 98.18 | 98.01 | 99.35 | 99.42 | 99.41 | 99.24 |
 |  |  | 95.92 | 87.02 | 66.35 |  | 98.17 | 97.02 | 95.94 |  | 99.44 | 98.68 | 97.17 |
Masai | 17:43 | 99.86 | 100.00 | 100.00 | 100.00 | 99.96 | 100.00 | 100.00 | 100.00 | 99.97 | 100.00 | 100.00 | 100.00 |
 |  |  | 99.87 | 99.54 | 97.87 |  | 99.85 | 99.29 | 98.59 |  | 99.85 | 98.34 | 98.70 |
Hobbes 2 | 7:51 | 99.82 | 99.98 | 99.97 | 99.97 | 99.97 | 99.98 | 99.97 | 99.97 | 99.99 | 100.00 | 99.99 | 99.98 |
 |  |  | 99.98 | 99.87 | 97.20 |  | 99.97 | 99.98 | 99.80 |  | 99.97 | 100.00 | 99.92 |
mrFAST | 12:32 | 99.32 | 100.00 | 100.00 | 100.00 | 99.42 | 100.00 | 100.00 | 100.00 | 99.43 | 100.00 | 100.00 | 100.00 |
 |  |  | 100.00 | 99.96 | 87.51 |  | 100.00 | 100.00 | 53.69 |  | 100.00 | 100.00 | 54.09 |
RazerS 3 d | 41:33 | 99.92 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
 |  |  | 100.00 | 99.84 | 98.62 |  | 100.00 | 99.95 | 99.92 |  | 100.00 | 99.95 | 99.92 |
RazerS 3 | 54:59 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
 |  |  | 100.00 | 100.00 | 100.00 |  | 100.00 | 100.00 | 100.00 |  | 100.00 | 100.00 | 100.00 |
Yara | 3:06 | — | — | — | — | — | — | — | — | — | — | — | — |
 |  |  | — | — | — |  | — | — | — |  | — | — | — |
BitMapper | 2:57 | 99.99 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
 |  |  | 100.00 | 99.99 | 99.98 |  | 100.00 | 100.00 | 100.00 |  | 100.00 | 100.00 | 100.00 |