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Table 2 Rabema benchmark results (normalized found interval) for 1 million 100 bp real reads of human

From: BitMapper: an efficient all-mapper based on bit-vector computing

Mapper

Time

Benchmark category

        
 

[min:sec]

All[%]

All-best[%]

Any-best[%]

Masai

42:50

99.94

100.00

100.00

100.00

99.99

100.00

100.00

100.00

99.99

100.00

100.00

100.00

   

100.00

99.97

98.93

 

100.00

99.99

99.70

 

100.00

99.99

99.80

Hobbes 2

60:05

99.89

99.99

99.97

99.97

99.98

99.98

99.98

99.99

99.99

99.99

99.99

100.00

   

99.96

99.91

98.43

 

99.99

99.99

99.91

 

100.00

100.00

99.99

mrFAST

98:06

99.79

100.00

100.00

100.00

99.91

100.00

100.00

100.00

99.92

100.00

100.00

100.00

   

100.00

99.97

96.45

 

100.00

99.96

93.61

 

100.00

99.97

93.88

RazerS 3 a

372:21

99.90

100.00

100.00

100.00

99.99

100.00

100.00

100.00

99.99

100.00

100.00

100.00

   

100.00

99.80

98.45

 

100.00

99.90

99.47

 

100.00

99.91

99.70

RazerS 3

512:46

100.00

100.00

100.00

100.00

100.00

100.00

100.00

100.00

100.00

100.00

100.00

100.00

   

100.00

100.00

100.00

 

100.00

100.00

100.00

 

100.00

100.00

100.00

Yara

29:25

—

—

—

—

—

—

—

—

—

—

—

—

   

—

—

—

 

—

—

—

 

—

—

—

BitMapper

17:03

99.99

100.00

100.00

100.00

99.99

100.00

100.00

100.00

99.99

100.00

100.00

100.00

   

100.00

99.99

99.98

 

100.00

100.00

99.98

 

100.00

100.00

99.99

  1. RazerS 3 a: the result of RazerS 3 in default sensitivity mode (i.e., finding 99% of mapping locations); RazerS 3: the result of RazerS 3 in full sensitivity mode (i.e., finding 100% of mapping locations)