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Table 7 Results for mapping 10 million 300bp single-end reads against caenorhabditis elegans and arabidopsis thaliana

From: BitMapper: an efficient all-mapper based on bit-vector computing

 

Caenorhabditis elegans

  

Arabidopsis thaliana

  

Mapper

Time [min:sec]

Peak

Mapping

Mapped

 

Time [min:sec]

Peak

Mapping

Mapped

 
 

1 thr

8 thr

memory

sites[million]

reads[%]

 

1 thr

8 thr

memory

sites[million]

reads[%]

 

Masai

48:54

—

11.5GB

17.44

99.9894

 

46:26

—

11.8GB

14.83

99.9884

 

Hobbes 2

66:38

13:12

0.9GB

2.14

0.5327

 

64:25

12:50

1.0GB

0.01

0.0219

 

mrFAST

80:56

—

9.9GB

16.71

96.1888

 

47:00

—

10.0GB

14.27

96.2356

 

RazerS 3 a

195:07

182:34

11.9GB

17.43

99.9894

 

172:21

155:48

12.0GB

14.82

99.9884

 

RazerS 3

209:30

185:29

12.6GB

17.44

99.9894

 

185:05

160:02

12.0GB

14.83

99.9884

 

Yara

34:20

7:43

2.1GB

17.33

99.9894

 

29:44

6:34

2.1GB

14.72

99.9884

 

BitMapper

12:26

4:57

10.1GB

17.43

99.9894

 

12:10

4:55

10.2GB

14.83

99.9884

 
  1. RazerS 3 a: the result of RazerS 3 in default sensitivity mode (i.e., finding 99% of mapping locations); RazerS 3: the result of RazerS 3 in full sensitivity mode (i.e., finding 100% of mapping locations)