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Table 7 Mapping time and compression ratios using BWA and the light-weight mapping model

From: Light-weight reference-based compression of FASTQ data

Data

BWA

Light-weight mapping model

Mapping time (s)

Compression ratios

Mapping time (s)

Compression ratios

ERR231645

130.30

0.124

46.60

0.127

ERR005143

533.72

0.150

56.21

0.151

SRR352384

4036.98

0.111

289.02

0.111

SRR801793

1907.43

0.174

79.19

0.176

SRR554369

449.68

0.179

105.33

0.182

ERR654984

282.84

0.146

69.37

0.140

ERR233152

209.38

0.120

82.43

0.126

SRR327342

2458.69

0.201

148.38

0.201

Average

1251.13

0.147

109.57

0.148