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Table 7 Mapping time and compression ratios using BWA and the light-weight mapping model

From: Light-weight reference-based compression of FASTQ data

Data BWA Light-weight mapping model
Mapping time (s) Compression ratios Mapping time (s) Compression ratios
ERR231645 130.30 0.124 46.60 0.127
ERR005143 533.72 0.150 56.21 0.151
SRR352384 4036.98 0.111 289.02 0.111
SRR801793 1907.43 0.174 79.19 0.176
SRR554369 449.68 0.179 105.33 0.182
ERR654984 282.84 0.146 69.37 0.140
ERR233152 209.38 0.120 82.43 0.126
SRR327342 2458.69 0.201 148.38 0.201
Average 1251.13 0.147 109.57 0.148