From: Clotho: addressing the scalability of forward time population genetic simulation
Parameter | Symbol (equation) | Scale 1 | Scale 2 |
---|---|---|---|
Generation | T | 100,000 | 100,000 |
Population Size | N=N e | 10,000 | 10,000 |
Chromosome Length | L | 1,000,000 | 10,000,000 |
Mutation Rate per base | μ b | 10−8 | 10−8 |
Mutation Rate per sequence | μ(=μ b L) | 10−2 | 10−1 |
Recombination Rate per base | ρ b | 10−8 | 10−8 |
Recombination Rate per sequence | ρ=(ρ b L) | 10−2 | 10−1 |
Mutation Events per generation | θ(=4N e μ) | 400 | 4,000 |
Recombination Events per generation | P(=4N e ρ) | 400 | 4,000 |