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Table 1 Simulation scenario configuration parameters

From: Clotho: addressing the scalability of forward time population genetic simulation

Parameter

Symbol (equation)

Scale 1

Scale 2

Generation

T

100,000

100,000

Population Size

N=N e

10,000

10,000

Chromosome Length

L

1,000,000

10,000,000

Mutation Rate per base

μ b

10−8

10−8

Mutation Rate per sequence

μ(=μ b L)

10−2

10−1

Recombination Rate per base

ρ b

10−8

10−8

Recombination Rate per sequence

ρ=(ρ b L)

10−2

10−1

Mutation Events per generation

θ(=4N e μ)

400

4,000

Recombination Events per generation

P(=4N e ρ)

400

4,000