PredSTP: a highly accurate SVM based model to predict sequential cystine stabilized peptides

BMC Bioinformatics

Table 1 Description of independent test sets analyzed by the new model (PredSTP)

Independent test sample	Query parameters (PDB^a)	Number of proteins	Number of chains
Small protein 92	○ SCOP: Small Proteins	92	163
	○ Experimental Method: X-RAY
	○ Resolution: 1.499 or less
Only Eukaryote	○ TAXONOMY: Eukaryota	45751	102748
Only Bacteria	○ TAXONOMY: Bacteria (eubacteria)	31664	80664
Only Archaea	○ TAXONOMY: Archaea	3127	8366
Only Virus	○ TAXONOMY: Viruses	4629	18642
Unassigned	○ TAXONOMY: Unassigned	479	980
Recently deposited proteins solved by NMR in PDB (July 2012 to March 25 2014)	○ Experimental Method: solution NMR	657	751

ISSN: 1471-2105