Table 5 Overlap between algorithm rankings and binding data for Mammal Circadian data. The percent of probes in the top X % of rankings for each algorithm that are in the set of bindings targets that we compiled from the ChIP-Seq data of Koike, et al, 2012. Note that the array for the circadian data set has multiple probes for some genes and duplicates were not removed
Alg | 5 % | 10 % | 15 % | 20 % |
|---|---|---|---|---|
SW rank | 32 | 50 | 63 | 74 |
DL rank | 41 | 54 | 69 | 70 |
LS rank | 37 | 53 | 65 | 71 |
JTK rank | 35 | 55 | 70 | 78 |