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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Capturing coevolutionary signals inrepeat proteins

Fig. 3

Native contacts can be predicted from the identity-equalized direct information DI id . On the center we show on grey shadow the contact map (closest atoms at distance lower than 8 Å) of representative family members a ANEX (PDB:2ZOC, chain A) b ANK (PDB:1N11, chain A) c TPR (PDB:4GCO). d PENTAPEPTIDE (PDB: 3DU1, chain X). On the upper triangle DI hits are marked in red crosses when they do not match a contact and on green circles when they do. On the lower triangle DI id hits are marked in red crosses when they do not match a contact and on green circles when they do. On their side we show the structure used with the backbones as gray ribbons, and the first 20 predicted contacts along multiple repeat pairs in red. On the right we compare the true positive rate obtained using DI (black triangles) and DI id (red squares) as predictor of contacts on the selected structure

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