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Fig. 2 | BMC Bioinformatics

Fig. 2

From: BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data

Fig. 2

Examples of DNA methylation co-occurrence patterns. a DU145 and LNCaP cell lines have different significant methylation co-occurrence patterns in region CYP1B1. b Two distinct co-occurrence patterns (one all sites are methylated while the other all cites are unmethylated) in the downstream region of HIST1H4D of DU145 cell line. Examples of correlated partially methylated CpG sites in a region in the upstream of TLX3 from PrEC cell line (c) and in the NPR3 region from LNCaP (d). For all sub-panels, coordinates used are based on hg18. Because not all reads belong to a significant pattern, the sum of percentages of all significant patterns (on the right hand side of each pattern) is not necessarily 100 %

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