Table 4 The specificity to nucleotides comprising duplicated human genes. Duplicated genes were divided into the following three groups according to their copy numbers: the 2–4 group, the 5–9 group, and the 10-or-more group. SP exon is the percentage of the nucleotides of the genes in a group that are excluded by a tool
From: Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale
Gene Copy Number | 2–4 | 5–9 | ≥10 |
|---|---|---|---|
Length (bp) | 2,582,680 | 447,130 | 708,127 |
| Â | S P exon (%) | ||
ReCon | 95.4 | 95.1 | 90.4 |
RepeatScout | 89.9 | 75.2a | 53.1a |
Red | 89.4 | 87.8 | 68.5 |
WindowMasker | 87.6a | 88.4 | 80.6 |
RepeatMasker | 89.4 | 88.6 | 84.3 |