Fig. 5

Transcript annotation pipeline and results using GRO-seq data from MCF-7 cells. a Schematic representation of a non-overlapping annotation pipeline of called transcripts. b Genome browser tracks for various types of transcripts in MCF-7 GRO-seq data. c Bar plot showing the fraction of each transcript type among all transcripts called from MCF-7 GRO-seq data using groHMM (n = 31,159). Although plotted in separate bars to match panel (a), all transcripts are uniquely assigned to a single category