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Table 1 Sequence read datasets used

From: Sealer: a scalable gap-closing application for finishing draft genomes

 

E. coli

S. cerevisiae

C. elegans

H. sapiens

P. glauca

Coverage

615x

25x

89x

71x

65x

Read length (bp)

98

100

100

250

150, 300 and 500

Paired-end read count

14,572,674

1,582,417

44,675,422

4.68x108

8.7 x109

Genome size (bp)

4,686,137

12,495,682

100,258,171

3.3x109

20.8x109

Short Read Archive (SRA) accession

SRR959238

ERR156523

ERR294494

ERR309932

SRS357050

Gene source

GCF_000019425

GCF_000146045

GCA_000002985

Not used

Not used

ABySS version and assembly k parameter

v1.5.2

v1.5.2

v1.3.6

v1.5.2

v1.3.5

k = 50

k = 30

k = 80

k = 150

k = 109