From: Sealer: a scalable gap-closing application for finishing draft genomes
E. coli | S. cerevisiae | C. elegans | H. sapiens | P. glauca | |
---|---|---|---|---|---|
Coverage | 615x | 25x | 89x | 71x | 65x |
Read length (bp) | 98 | 100 | 100 | 250 | 150, 300 and 500 |
Paired-end read count | 14,572,674 | 1,582,417 | 44,675,422 | 4.68x108 | 8.7 x109 |
Genome size (bp) | 4,686,137 | 12,495,682 | 100,258,171 | 3.3x109 | 20.8x109 |
Short Read Archive (SRA) accession | SRR959238 | ERR156523 | ERR294494 | ERR309932 | SRS357050 |
Gene source | GCF_000019425 | GCF_000146045 | GCA_000002985 | Not used | Not used |
ABySS version and assembly k parameter | v1.5.2 | v1.5.2 | v1.3.6 | v1.5.2 | v1.3.5 |
k = 50 | k = 30 | k = 80 | k = 150 | k = 109 |