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Table 2 Gap-closing performance of Sealer, SOAPdenovo GapCloser and GapFiller on five draft genome assemblies ranging from ~5 Mbp to 20 Gbp

From: Sealer: a scalable gap-closing application for finishing draft genomes

Draft genome species

Total gaps

Software

Gaps completely closed

% Success

Wall clock time (hh:mm)

Memory (GB)

E. coli

18

Sealer

17

94.4

00:20

0.5

GapCloser

2

11.1

00:05

25.7

GapFiller

15

83.3

00:43

0.4

S. cerevisiae

213

Sealer

178

83.6

00:02

0.5

GapCloser

90

42.3

00:02

3.8

GapFiller

168

78.9

00:20

0.7

C. elegans

4,223

Sealer

2,968

70.3

09:54

1.4

GapCloser

2,062

48.8

01:49

101.0

GapFiller

3,186

75.4

37:42

0.7

H. sapiens

237,406

Sealer

120,676

50.8

29:19

22.2

GapCloser

116,297

48.9

83:15

178.1

GapFiller

Incomplete. Terminated after 353 h.

P. glauca

2,894,274

Sealer

399,476

13.8

26:12

45.3

GapCloser

Not attempted

GapFiller