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Table 2 Gap-closing performance of Sealer, SOAPdenovo GapCloser and GapFiller on five draft genome assemblies ranging from ~5 Mbp to 20 Gbp

From: Sealer: a scalable gap-closing application for finishing draft genomes

Draft genome species Total gaps Software Gaps completely closed % Success Wall clock time (hh:mm) Memory (GB)
E. coli 18 Sealer 17 94.4 00:20 0.5
GapCloser 2 11.1 00:05 25.7
GapFiller 15 83.3 00:43 0.4
S. cerevisiae 213 Sealer 178 83.6 00:02 0.5
GapCloser 90 42.3 00:02 3.8
GapFiller 168 78.9 00:20 0.7
C. elegans 4,223 Sealer 2,968 70.3 09:54 1.4
GapCloser 2,062 48.8 01:49 101.0
GapFiller 3,186 75.4 37:42 0.7
H. sapiens 237,406 Sealer 120,676 50.8 29:19 22.2
GapCloser 116,297 48.9 83:15 178.1
GapFiller Incomplete. Terminated after 353 h.
P. glauca 2,894,274 Sealer 399,476 13.8 26:12 45.3
GapCloser Not attempted
GapFiller