From: Sealer: a scalable gap-closing application for finishing draft genomes
Draft genome species | Total gaps | Software | Gaps completely closed | % Success | Wall clock time (hh:mm) | Memory (GB) |
---|---|---|---|---|---|---|
E. coli | 18 | Sealer | 17 | 94.4 | 00:20 | 0.5 |
GapCloser | 2 | 11.1 | 00:05 | 25.7 | ||
GapFiller | 15 | 83.3 | 00:43 | 0.4 | ||
S. cerevisiae | 213 | Sealer | 178 | 83.6 | 00:02 | 0.5 |
GapCloser | 90 | 42.3 | 00:02 | 3.8 | ||
GapFiller | 168 | 78.9 | 00:20 | 0.7 | ||
C. elegans | 4,223 | Sealer | 2,968 | 70.3 | 09:54 | 1.4 |
GapCloser | 2,062 | 48.8 | 01:49 | 101.0 | ||
GapFiller | 3,186 | 75.4 | 37:42 | 0.7 | ||
H. sapiens | 237,406 | Sealer | 120,676 | 50.8 | 29:19 | 22.2 |
GapCloser | 116,297 | 48.9 | 83:15 | 178.1 | ||
GapFiller | Incomplete. Terminated after 353 h. | |||||
P. glauca | 2,894,274 | Sealer | 399,476 | 13.8 | 26:12 | 45.3 |
GapCloser | Not attempted | |||||
GapFiller |