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Table 1 Performance evaluation under Study I (Setting 1), (G=5000, 500 DE gene) #

From: Confident difference criterion: a new Bayesian differentially expressed gene selection algorithm with applications

Cut-off Method CDE CCDE CCEE FNR FPR FDR FNDR
γ 0 I 796.7(14.5) 466.7(4.7) 4169.9(13.9) 0.067(0.009) 0.073(0.003) 0.414(0.011) 0.008(0.001)
(0.4) II 864.4(13.8) 499.2(1.1) 4134.8(13.8) 0.002(0.002) 0.081(0.003) 0.422(0.009) 0.000(0.000)
γ 0 I 526.5(9.8) 419.2(6.7) 4392.7(6.9) 0.162(0.013) 0.024(0.002) 0.204(0.011) 0.018(0.001)
(0.6) II 582.3(7.3) 493.3(3.0) 4411.0(6.9) 0.013(0.006) 0.020(0.002) 0.153(0.010) 0.002(0.001)
FDR I 296.4(13.7) 283.3(12.9) 4486.9(2.9) 0.433(0.026) 0.003(0.001) 0.044(0.009) 0.046(0.003)
(0.05) II 469.2(13.1) 450.7(10.2) 4481.5(4.4) 0.099(0.020) 0.004(0.001) 0.039(0.009) 0.011(0.002)
  SAM 330.5(16.0) 314.0(13.5) 4483.4(4.7) 0.372(0.027) 0.004(0.001) 0.050(0.013) 0.040(0.003)
  LIMMA 320.2(15.2) 304.9(13.7) 4484.7(4.1) 0.390(0.027) 0.003(0.001) 0.048(0.012) 0.042(0.003)
  SPH 192.0(10.6) 188.1(10.0) 4496.1(2.1) 0.624(0.020) 0.001(0.000) 0.020(0.011) 0.065(0.002)
  EBA 166.4(14.1) 158.8(13.3) 4492.3(2.2) 0.682(0.027) 0.002(0.000) 0.046(0.012) 0.071(0.003)
  1. #Empirical estimates of the standard deviation were reported in the parentheses