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Table 2 Performance evaluation under Study I (Setting 2), (G=5000, 500 DE gene) #

From: Confident difference criterion: a new Bayesian differentially expressed gene selection algorithm with applications

Cut-off Method CDE CCDE CCEE FNR FPR FDR FNDR
γ 0 I 1086.5(22.5) 476.3(4.4) 3890.8(21.9) 0.045(0.009) 0.135(0.005) 0.561(0.009) 0.006(0.001)
(0.4) II 1388.1(25.7) 499.7(0.5) 3611.6(25.7) 0.001(0.001) 0.197(0.006) 0.640(0.007) 0.000(0.000)
γ 0 I 656.8(13.8) 448.2(5.5) 4291.4(13.1) 0.104(0.011) 0.046(0.003) 0.317(0.014) 0.012(0.001)
(0.6) II 749.3(15.0) 496.0(1.8) 4246.7(15.1) 0.008(0.004) 0.056(0.003) 0.338(0.014) 0.001(0.000)
FDR I 357.1(8.7) 342.7(8.0) 4485.6(3.9) 0.315(0.016) 0.003(0.001) 0.040(0.011) 0.034(0.002)
(0.05) II 480.7(10.5) 458.7(7.7) 4478.0(5.7) 0.083(0.015) 0.005(0.001) 0.046(0.011) 0.009(0.002)
  SAM 326.9(12.9) 312.0(11.2) 4485.1(4.5) 0.376(0.022) 0.003(0.001) 0.045(0.013) 0.040(0.002)
  LIMMA 329.5(51.9) 309.9(21.6) 4480.4(31.8) 0.380(0.043) 0.004(0.007) 0.053(0.045) 0.041(0.004)
  EBA 190.4(6.7) 184.2(6.7) 4493.7(1.9) 0.632(0.013) 0.001(0.000) 0.033(0.010) 0.066(0.001)
  1. #Empirical estimates of the standard deviation were reported in the parentheses