From: Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species
Method
Software package
Version
URL
Information-based
MI
infCalc
v0.1.2
https://github.com/aavilahe/infcalc
VI
MIj
MIHmin
MIw
DCA
“2011/12”
http://dca.rice.edu/portal/dca/download
Direct
DI
DI256
Code S1 in [68]
“2013”
http://doi.org/10.1371/journal.pcbi.1003176.s002
DI32
DIplm
plmDCA
symmetric_v2
http://plmdca.csc.kth.se/
PSICOV
V1.09
http://bioinfadmin.cs.ucl.ac.uk/downloads/PSICOV/
Phylogenetic
CMPcor
CoMap
1.5.1b5
http://home.gna.org/comap/doc/html/index.html
CMPchg
CMPvol
CMPpol