From: Breaking the computational barriers of pairwise genome comparison
Gepard | MUMmer | Mauve | ||||
---|---|---|---|---|---|---|
Comparison | Time | Memory | Time | Memory | Time | Memory |
TYLCV-TYLCV-lr2 | 0.84 | 52824 | 0.00 | 2944 | 0.06 | 2800 |
BuchneraAPS-BuchneraBp | 2.56 | 74808 | 0.44 | 11100 | 6.73 | 14304 |
E.colik12-E.coliO157 | 33.12 | 378412 | 10.63 | 79212 | 45.92 | 99880 |
D.Melanogaster-D.Pseudoobscura | 238.34 | 716244 | 45.99 | 355272 | 294.92 | 379912 |
H.Sapiens-Chr1-P.Troglodytes-chr1 | 7 0 8 4 . 0 0 ∗1 | 49788208 | 23226.00∗1 | 15747168 | >604800.00 | n.a. |
LASTZ | LAST | GECKO | ||||
Comparison | Time | Memory | Time | Memory | Time | Memory |
TYLCV-TYLCV-lr2 | 0.04 | 67388 | 0.00 | 3024 | 0.36 | 1564816 |
BuchneraAPS-BuchneraBp | 0.46 | 71244 | 46.20 | 475912 | 1.60 | 1564816 |
E.colik12-E.coliO157 | 1.83 | 95884 | 109.00 | 1972028 | 17.20 | 1564816 |
D.Melanogaster-D.Pseudoobscura | 19.64 | 190448 | 1593.00 | 5436716 | 48.72 | 1564816 |
H.Sapiens-Chr1-P.Troglodytes-chr1 | 78360.00 | 5782352 | n.a. | 312065840 | 11848.15 | 1564816 |