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Table 2 Comparison of InteMAP merging algorithm with MeGAMerge and Minimus2

From: InteMAP: Integrated metagenomic assembly pipeline for NGS short reads

  Total cover length (Mbp) Corr. N-len at 10 Mbp (bp) E-size (bp) Num. of covered genes Total errors Kbp/errors Identity (%)
Merging high-coverage-sequence assemblies (from IDBA-UD and ABySS)
InteMAP 202.3 145,649 9,960 12,491 50 405.6 99.9
MeGAMerge 205.9 154,674 10,290 12,649 94 219.1 99.9
Minimus2 11.9 40,393 6,630 7,237 63 188.7 99.9
Merging low-coverage-sequence assemblies (from IDBA-UD and CABOG)
InteMAP 262.7 118,056 10,317 65,809 5,059 51.8 99.8
MeGAMerge 269.3 145,022 11,534 69,324 5,287 50.9 99.7
Minimus2 108.4 39,454 7,233 30,918 3,029 35.7 99.8
Final merged assembly
InteMAP 266.8 244,190 17,652 70,859 5,072 52.6 99.8
MeGAMerge 273.8 253,783 18,148 72,014 5,399 50.5 99.8
Minimus2 111.3 55,893 10,285 34,892 3,045 36.4 98.8