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Table 1 Basic analysis in IMEX of the IMGT/HighV-QUEST sequence alignments for the TR using primer set 1 and 2 of proband p78690

From: ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data

Proband: p78690 TRB primer set 1 TRB primer set 2 TRB primer set 2: TRB primer set 2:
        CD4-/CD8+ CD4+/CD8-
  T1 T2 T3 T1 T2 T3 T3 T3
Productive 16,707 104,346 91,840 77,380 77,997 148,676 224,397 170,696
Unproductive 4018 22,534 18,739 9382 16,066 27,577 42,477 32,884
Unknown 4461 2639 1994 1424 67 1102 1403 1167
No result 11,989 10,879 9068 14,268 1162 14,694 11,498 8135
Total number of sequences 37,175 140,398 121,641 102,454 95,292 192,049 279,775 212,882
  1. For each TR primer set (T cell receptor β chain amplification based on Biomed-2 primer sets) we have determined the total number of productive, unproductive, unknown and no result sequences. For primer set 2 at time point 3 we prepared an additional basic analysis for CD4-/CD8+ and CD4+/CD8- sorted cells