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Fig. 4 | BMC Bioinformatics

Fig. 4

From: Amplitude spectrum distance: measuring the global shape divergence of protein fragments

Fig. 4

Disagreements with RMSD (similar fragments for ASD but not for RMSD): scores computed on the whole fragments and best manual (sub) alignment illustrated above. a Astral d2lvfa, residues 95:117 (red) and Astral d3ruac, residues 48:70 (green), RMSD is 4.8 and ASD is 1446.7; b Astral d1x7sa, residues 78:100 (red) and residues 82:104 (green) RMSD is 9.3A and ASD is 1472.3; c Astral d3rufa, residues 180:202 (red) and Astral d3w29a, residues 239:261 (green), the RMSD is 4.9 and ASD is 1357.8

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