Table 2 Combinatorial enhancers generated by CoSREM. the number of exons each set resides in, and the splicing factors that they may bind to
From: CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements
Combinatorial SREs | Number of exons | Splicing factors |
|---|---|---|
AGAGGA,TGAGGA | 185 | FMRP |
GAAGGC,TGAGGA | 113 | 9G8,SC35,SF2/ASF |
CAAGGA,TGAGGA | 105 | - |
AGAGGA,GATGGA | 104 | FMRP |
AGAGGA,CAAGGA | 103 | FMRP |
AGAGGA,GAGGAC | 101 | FMRP |
GGAGCC,TGAGGA | 100 | - |