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Fig. 2 | BMC Bioinformatics

Fig. 2

From: CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments

Fig. 2

Example functionality of CompGO using published ChiP-seq data. 1000 BED coordinates were selected at random and form part of the example dataset packages with CompGO. a Differentially enriched GO and pathway terms. b Hierarchical clustering 1. c Principle Component Analysis. d Direct comparison of z-scores with Jaccard Coefficient overlaid (Eq. 5) onto terms. e Directed Acyclic Graph. f KEGG Pathway colored by which experiment the Gene was mapped to. a, b, e and f utilise Eq. 3 in their rankings. d utilises Eq. 1

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BMC Bioinformatics

ISSN: 1471-2105

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