Table 1 Description of the three datasets used in this study
From: WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data
Synechococcus sp. WH8103 | Rhodobacter sphaeroides | Homo sapiens Chr.14 | ||
|---|---|---|---|---|
Genome | Genome size | 2,429,688 | 4,603,060 | 88,289,540 |
GC % | 59.48 | 68.79 | 40.89 | |
Genome composition | 1 x chromosome | 2 x chromosomes | 1 x chromosome | |
5 x plasmids | ||||
Pair-End library | Read length (bp) | 101 | n.a. | n.a. |
Nb of reads (x2) | 2.0 × 107 | |||
Average insert size (bp) | 75 | |||
Mate-Pair library | Read length | 101 | 101 | 101 |
Nb of reads | 4.1 × 107 | 2,05 × 106 | 3.65 × 107 | |
Maximal insert size | 3,800 | 3,000 | 3,500 | |
Contigs | Contigs assembler | CLC AssemblyCell© | Bambus2 [16] | CABOG [17] |
Nb of contigs | 42 | 177 | 3541 | |
Nb of bp in contigs | 2,398,638 | 4,371,571 | 86,255,201 | |
Reference | This study | [14] | [14] |