Table 1 Comparison of RPathVisio with other similar packages available in R
Software | SigPathway | ReactomePA | KEGGGraph | PathView | RPathVisio |
|---|---|---|---|---|---|
Feature | |||||
Pathway sources available | GO, KEGG, BioCarta, BioCyc, SuperArray | Reactome | KEGG | KEGG | WikiPathways, Reactome, NetPath, WormBase |
Pathway building | — | — | + | — | + |
Multi-omics support | — | — | + | + | + |
Plots | — | + | — | + | — |
Pathway visualisation | — | — | + | + | + |
Multiple data visualisation | — | — | + | + | + |
Pathway statistics | Gene set statistics | EA, GSEA FM detection | — | — | EA |
Export | Text, HTML | Text | Images | Images | Text, GPML, Images, HTML |