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Table 1 Statistics of GO annotations. The data in parentheses along with Yeast (or Human) is the number of proteins in that dataset. First column: \(|\mathcal {T}|\) is the total number of distinct GO terms used for empirical study, and the data in parentheses is the number of GO annotations of all the proteins. [3,10) characterizes the number of terms associated with at least 3 and less than 10 proteins; [10,30) represents the number of terms associated with at least 10 and less than 30 proteins; and ≥30 includes the terms associated with at least 30 proteins, Avg ±Std is the average number of annotations of a protein and its standard deviation. The root GO term in each sub-ontology (BP, CC and MF) are not included

From: Predicting protein function via downward random walks on a gene ontology

  

\(|\mathcal {T}| \)

[3,10)

[10,30)

≥30

Avg ± Std

Yeast(5914)

BP

2979 (210949)

1350

761

868

35.67 ± 34.62

 

CC

731 (79378)

359

170

202

13.42 ± 12.01

 

MF

978 (35033)

546

236

196

5.92 ± 6.47

Human(19009)

BP

7294 (694455)

3237

1877

2180

36.53 ± 53.25

 

CC

978 (230826)

414

224

340

12.14 ± 12.66

 

MF

1772 (106410)

943

420

409

5.59 ± 7.99