Fig. 4
From: New in silico approach to assessing RNA secondary structures with non-canonical base pairs
(a) The reference secondary structure of archaeal tyrosyl-tRNA with LW-annotated non-canonical base pairs, and its dot-bracket notation. Base pairs close to particular LW interaction, but not meeting strict criteria for membership are connected by gray dashed lines. (b–e) Secondary structures predicted by (b) RC/Rp-1, (c) RC/Rp-2, (d) RC/Rp-3, and (e) RNAwolf, and arc diagrams to display the results of comparing dot-bracket representations of particular predicted models with the reference structure. Orange arcs show pseudoknot interaction