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Table 2 Average computing times (and standard deviation) for RNA STRAND-deposited structures (in seconds)

From: New in silico approach to assessing RNA secondary structures with non-canonical base pairs

Method Sequence length (nts)
1–50 51–100 101–200 201–500
(a) Results for sequence-based prediction
RNAwolf 9.51 (0.25) 9.80 (0.26) 10.61 (0.61) 37.44 (19.15)
MC-Fold-DP 1.62 (0.38) 1.67 (0.48) 1.87 (0.48) 6.63 (2.03)
MC-Fold 6.50 (5.82) 142.26 (124.27) 1376.01 (992.24) n/a
RC/Rp-1 12.15 (2.78) 20.94 (4.88) 33.38 (4.74) 92.81 (23.39)
RC/Rp-2 12.22 (2.82) 21.20 (4.89) 34.00 (4.81) 97.27 (24.41)
RC/Rp-3 12.17 (2.81) 20.99 (4.90) 33.56 (4.73) 93.40 (23.53)
(b) Results for sequence and canonical secondary structure-base prediction
RNAwolf 5.71 (4.05) 3.38 (3.93) 5.71 (4.05) 15.06 (58.73)
MC-Fold-DP n/a n/a n/a n/a
MC-Fold 1.87 (2.83) 35.72 (71.92) 825.68 (1033.23) n/a
RC/Rp-1 10.64 (3.30) 17.47 (4.19) 29.44 (4.19) 83.97 (23.05)
RC/Rp-2 10.72 (3.35) 17.73 (4.23) 29.99 (4.21) 86.58 (24.03)
RC/Rp-3 10.67 (3.34) 17.53 (4.22) 29.62 (4.21) 84.44 (23.13)