Table 1 The available options in the preprocessing functional unit
From: mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics
Abbreviation | Description |
|---|---|
rawdata | The initial gene expression values |
mc | The values after ‘mean-centering’ normalization |
z | The values after ‘z-score’ normalization |
q | The values after ‘quantile’ normalization |
cl | The values after ‘cyclic loess’ normalization |
mcL2 | The values after log2 transformation and ‘mean-centering’ normalization |
zL2 | The values after log2 transformation and ‘z-score’ normalization |
qL2 | The values after log2 transformation and ‘quantile’ normalization |
clL2 | The values after log2 transformation and ‘cyclic loess’ normalization |