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Table 3 Comparison of features between mAPKL and other related R-packages

From: mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics

Package

Data

Significance analysis

Classification

Annot. analysis

Network chars

Reporting

Import

Use eSet

Norm.

Sampling

Pred.

Perf. metrics

mAPKL

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

edge

No

Yes

Yes

No

Yes

No

No

No

No

No

limma

Yes

No

Yes

No

Yes

No

No

Yes

No

No

multtest

No

Yes

No

No

Yes

No

No

No

No

No

plsgenomics

No

No

Yes

No

Yes

Yes

No

No

No

No

randomForest

No

No

No

No

Yes

Yes

No

No

No

No

samr

No

No

Yes

No

Yes

No

No

No

No

No

st

No

No

No

No

Yes

No

No

No

No

No

caret

No

No

No

Yes

Yes

Yes

Yes

No

No

No

ClassifyR

No

Yes

No

No

Yes

Yes

Yes

No

No

No

CMA

No

Yes

No

Yes

Yes

Yes

Yes

No

No

No

MCRestimate

No

Yes

No

No

Yes

Yes

Yes

No

No

No

MLInterfaces

No

Yes

No

Yes

Yes

Yes

Yes

No

No

No