From: mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics
Package | Data | Significance analysis | Classification | Annot. analysis | Network chars | Reporting | ||||
---|---|---|---|---|---|---|---|---|---|---|
Import | Use eSet | Norm. | Sampling | Pred. | Perf. metrics | |||||
mAPKL | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
edge | No | Yes | Yes | No | Yes | No | No | No | No | No |
limma | Yes | No | Yes | No | Yes | No | No | Yes | No | No |
multtest | No | Yes | No | No | Yes | No | No | No | No | No |
plsgenomics | No | No | Yes | No | Yes | Yes | No | No | No | No |
randomForest | No | No | No | No | Yes | Yes | No | No | No | No |
samr | No | No | Yes | No | Yes | No | No | No | No | No |
st | No | No | No | No | Yes | No | No | No | No | No |
caret | No | No | No | Yes | Yes | Yes | Yes | No | No | No |
ClassifyR | No | Yes | No | No | Yes | Yes | Yes | No | No | No |
CMA | No | Yes | No | Yes | Yes | Yes | Yes | No | No | No |
MCRestimate | No | Yes | No | No | Yes | Yes | Yes | No | No | No |
MLInterfaces | No | Yes | No | Yes | Yes | Yes | Yes | No | No | No |