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Table 1 Comparison of software programs simulating gene trees in species trees and networks. Migration refers to modeling post-speciation gene flow

From: Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees

 

Gene trees

 

Small pop.

Infinite sites

  
 

in networks

Λ-coalescent

mult. merger

model

Recombination

Migration

COAL [6]

no

no

no

no

no

no

CoaSim [32]

no

no

no

yes

yes

yes

fastsimcoal2 [15]

yes

no

yes

no

yes

yes

Genome [30]

yes

no

no

yes

yes

yes

GUMS [20]

no

no

no

no

no

yes

ms [24]

yes

no

no

yes

yes

yes

msHOT [21]

yes

no

no

yes

yes

yes

msms [14]

yes

no

no

yes

yes

yes

scrm [41]

yes

no

no

yes

yes

yes

simcoal2 [27]

yes

no

yes

no

yes

yes

Hybrid-Lambda

yes

yes

no

yes

no

no