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Table 4 Included GRN algorithms. GRN algorithms included in the current version (1.0) of the netbenchmark Bioconductor package

From: NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference

GRN Algorithms

Wrapper function

ARACNE [24]

aracne.wrap

C3NET [26]

c3net.wrap

CLR [9]

clr.wrap

GeneNet [17]

genenet.wrap

Genie3 [30]

genie3.wrap

MutRank [18]

mutrank.wrap

MRNET/B [27, 29]

mrnet.wrap & mrnetb.wrap

PCIT [25]

pcit.wrap

Zscore [19]

zscore.wrap