Table 2 Average % of unobserved nodes that have predictions of a particular behavior, their information gain and the precision for these predictions under the different notions giving 10 % or 50 % of the E. coli expression measurements as input. In the last major column (“all predictions”) the rows “% of unobserved nodes” quantify the overall recovery rates
Prediction | + / − | 0 | Weak predictions ⊕/ ⊖/ ± | All predictions | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Notion | FWP | SP | FSP | FWP | SP | FSP | FWP | SP | FSP | FWP | SP | FSP |
Obtained using 10 % of the measurements as input. | ||||||||||||
% of unobserved nodes | 0.13 % | 2.60 % | 2.91 % | 1.19 % | 46.43 % | 53.64 % | 7.74 % | 12.99 % | 13.14 % | 9.06 % | 62.03 % | 69.70 % |
Information gain | 0.13 % | 2.60 % | 2.91 % | 1.19 % | 46.43 % | 53.64 % | 2.86 % | 4.80 % | 4.85 % | 4.17 % | 53.83 % | 61.41 % |
Precision of prediction | 29.02 % | 56.28 % | 54.50 % | 82.16 % | 70.69 % | 71.66 % | 80.94 % | 85.19 % | 85.14 % | 80.03 % | 72.97 % | 73.24 % |
P -value | 0.2791 | 1.0389e-08 | 8.0897e-10 | |||||||||
Obtained using 50 % of the measurements as input. | ||||||||||||
% of unobserved nodes | 0.48 % | 3.06 % | 3.08 % | 4.84 % | 67.93 % | 72.30 % | 28.99 % | 7.27 % | 7.07 % | 34.31 % | 78.26 % | 82.45 % |
Information gain | 0.48 % | 3.06 % | 3.08 % | 4.84 % | 67.93 % | 72.30 % | 10.70 % | 2.68 % | 2.61 % | 16.02 % | 73.67 % | 77.99 % |
Precision of prediction | 24.10 % | 62.16 % | 62.14 % | 82.79 % | 70.22 % | 70.97 % | 82.44 % | 86.75 % | 86.80 % | 81.33 % | 71.10 % | 71.57 % |
P -value | 0.5 | 2.9782e-09 | 2.0785e-10 | |||||||||