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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies

Fig. 5

Impact of variability between pipelines. a Number of intergenic and intronic pipeline-specific variants. b Pipeline-specific variants in exonic, UTR, and non-coding RNA elements. c Functional impact of pipeline-specific protein-coding variants (blue = Conventional; green = HC; light = Novel; dark = Known). d Principal components 1 and 2 calculated from genotypes (MAF >1 %) using variants calls from conventional (left) or HC (right) pipelines. Individuals coded by self-reported Race (red = American Indian/Alaska Native; orange = Asian; yellow = Multiple; green = White; blue = Black/African American; purple = Other) and Ethnicity (circle = Hispanic/Latino; triangle = Not Hispanic/Latino)

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BMC Bioinformatics

ISSN: 1471-2105

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