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Table 1 Experimental machine

From: Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences

Item Specification
CPU Intel Xeon CPU E5-2680 v2 @ 2.80 GHz
Main memory DDR3 512 GB
GPU NVIDIA Tesla K40 ×2
Video memory GDDR5 12 GB ×2
OS Ubuntu 14.04.1
Compiler gcc 4.8.2
Compiler option O3
CUDA CUDA 6.5