From: Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences
Item
Specification
CPU
Intel Xeon CPU E5-2680 v2 @ 2.80 GHz
Main memory
DDR3 512 GB
GPU
NVIDIA Tesla K40 ×2
Video memory
GDDR5 12 GB ×2
OS
Ubuntu 14.04.1
Compiler
gcc 4.8.2
Compiler option
O3
CUDA
CUDA 6.5