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Table 2 Experimental datasets

From: Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences

Sequence

Accession number

Length (bp)

Remark

s 1

[GenBank:CP002091]

5,218,947

Bacillus anthracis

s 2

[GenBank:AE016879]

5,227,293

Bacillus anthracis

s 3

[GenBank:CP001598]

5,227,419

Bacillus anthracis

s 4

[GenBank:CP001970]

5,227,898

Bacillus anthracis

s 5

[GenBank:AE017225]

5,228,663

Bacillus anthracis

s 6

[GenBank:CP001215]

5,230,115

Bacillus anthracis

s 7

[GenBank:AC_000153]

33,483,523

Human chromosome 21

s 8

[GenBank:NC_000021]

46,709,983

Human chromosome 21

s 9

[GenBank:NC_018932]

47,690,666

Human chromosome 21

s 10

[GenBank:NC_000019]

58,617,616

Human chromosome 19

s 11

[GenBank:FR853090]

56,181,278

Gorilla chromosome 19

s 12

[GenBank:NC_006486]

63,644,993

Chimpanzee chromosome 19

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BMC Bioinformatics

ISSN: 1471-2105

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