BMC Bioinformatics

Table 5 Number of EE candidate genes prioritized in each version of each dataset. The prioritization method is discussed in detail in Additional file 1

From: Systematic noise degrades gene co-expression signals but can be corrected

Study	Raw	BC	BC+QN	RUV-random
Hawrylycz et al.	84	80	75	83
Miller et al.	80	82	84	86
Kang et al.	48	-^a	33	62
Colantuoni et al.	33	42	43	44
Hernandez et al.	137	58	65	67^b

^aPrioritization for the background-corrected Kang et al. dataset was not possible as no cutoff value for significant correlations could be defined
^bAs discussed earlier, we use the version of BC+RUV-random for this dataset

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ISSN: 1471-2105

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