From: DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment
Total sequences | Clustal Omega | DECIPHER | MAFFT | MUSCLE | PASTAa | ||
---|---|---|---|---|---|---|---|
HOMSTRAD-modb | Maximum score | 0.898 | 0.910 | 0.920 | 0.881 | 0.921 | |
Change from max | 2 | −0.013 | −0.02 | −0.045 | 0.000 | N/A | |
125 | 0.000 | 0.000 | 0.000 | −0.007 | 0.000 | ||
250 | −0.009 | −0.011 | −0.028 | −0.028 | −0.003 | ||
500 | −0.013 | −0.014 | −0.037 | −0.028 | −0.016 | ||
1000 | −0.035 | −0.011 | −0.049 | −0.048 | −0.026 | ||
2000 | −0.035 | −0.019 | −0.054 | −0.088 | −0.028 | ||
4000 | −0.069 | −0.030 | −0.077 | −0.128 | −0.049 | ||
PREFAB-modb | Maximum score | 0.875 | 0.908 | 0.923 | 0.855 | 0.900 | |
Change from max | 2 | −0.067 | −0.085 | −0.123 | −0.047 | N/A | |
125 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||
250 | −0.022 | −0.007 | −0.057 | −0.011 | −0.015 | ||
500 | −0.022 | −0.004 | −0.068 | −0.026 | −0.029 | ||
1000 | −0.034 | −0.023 | −0.090 | −0.056 | −0.045 | ||
2000 | −0.069 | −0.037 | −0.107 | −0.093 | −0.080 | ||
4000 | −0.121 | −0.026 | −0.098 | −0.156 | −0.116 |