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Table 5 The expression computation time (in minutes) of various methods for the NC phenotype of the SELC dataset. All methods use parallel computing involving four threads. We show the running time for expression computation and exclude the time for read alignment. Computation time is obtained on a 3.2 GHz quad-core Intel machine with 16G RAM

From: Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate

Method Cufflinks RSEM MMSEQ NLDMseq
Computation time 70 44 50 26