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Table 2 Area Under Precision-Recall, computation times and relative gains on the E. coli dataset using BRANE Cut with CLR or GENIE3 weights

From: BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference

 

CLR

BC-CLR

GENIE3

BC-GENIE3

AUPR (×10−2)

7.86

8.79

8.90

9.17

Total comput. time (min)

41.0

41.05

303

303.05

Gain

11.8 % AUPR gain over CLR

3.0 % AUPR gain over Genie3

 

7.4 × faster than Genie3

Negligible additional computation cost