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Table 3 Comparison of graph inference in terms of number of true positive edges and recall at constant precision using GENIE3 or BRANE Cut-GENIE3 on the E. coli dataset

From: BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference

Precision (%)

Recall (%)

 

GENIE3

BRANE Cut

90

0.55

2.00

85

2.31

3.40

80

3.77

3.86

75

4.19

4.55

Precision (%)

TP edges

 

GENIE3

BRANE Cut

90

18

66

85

75

112

80

124

127

75

138

150