Skip to main content

Table 3 Average z-score computed from the alignment score using different index coverage. We use \(cover(\mathcal {F}) =\) 60 %, 70 % and 80 %. In all these cases, the alignment subnetworks are found to be statistically very significant

From: Indexing a protein-protein interaction network expedites network alignment

  0 insert, 0 delete 1 insert, 0 delete 0 insert, 1 delete  
        Index Coverage      
  Sequence 60 % 70 % 80 % ColT 60 % 70 % 80 % ColT 60 % 70 % 80 % ColT
  mutation             
H. Pylori 0 % 28.99 28.99 28.99 28.99 24.92 25.18 27.49 28.32 26.16 26.16 26.80 26.80
  5 % 28.77 29.05 29.56 29.56 25.57 25.59 26.20 28.62 24.89 24.89 26.62 26.62
  10 % 25.49 28.82 30.15 30.15 22.53 26.43 27.90 29.22 25.26 25.73 27.42 27.42
  20 % 25.14 28.24 29.78 29.78 22.41 26.43 28.43 30.61 26.81 26.81 28.03 28.04
E. coli 0 % 30.25 30.25 31.13 31.13 24.01 24.11 28.93 29.60 25.38 25.38 26.64 26.64
  5 % 28.99 28.99 31.06 31.06 26.39 26.75 31.14 31.02 25.60 25.60 27.48 27.48
  10 % 26.53 28.62 30.10 30.10 21.68 24.99 25.42 30.76 23.84 26.26 27.79 27.79
  20 % 31.65 31.65 32.08 32.08 30.89 30.91 31.82 32.65 28.07 28.07 29.00 29.55
M. musculus 0 % 15.37 15.37 18.05 18.08 8.64 10.15 13.00 14.80 13.77 14.57 16.72 16.72
  5 % 12.46 12.61 17.49 18.34 8.86 9.97 10.40 15.28 14.93 15.42 16.93 16.93
  10 % 13.86 15.25 16.30 19.11 10.22 11.86 12.87 15.42 15.34 15.34 15.89 17.60
  20 % 14.04 15.51 20.45 20.47 9.11 11.10 11.40 16.66 14.99 15.67 18.90 18.90