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Table 3 Reactions and rates of the repressilator model

From: A straightforward method to compute average stochastic oscillations from data samples

No.

Reaction

Rate law

R1. Degradation of LacI transcripts

X→∅

k d_m R N A·X

R2. Degradation of TetR transcripts

Y→∅

k d_m R N A·Y

R3. Degradation of CI transcripts

Z→∅

k d_m R N A·Z

R4. Translation of LacI

∅→P X

k_t l·X

R5. Translation of TetR

∅→P Y

k_t l·Y

R6. Translation of CI

∅→P Z

k_t l·Z

R7. Degradation of LacI

P X→∅

k d_p r o t·P X

R8. Degradation of TetR

P Y→∅

k d_p r o t·P Y

R9. Degradation of CI

P Z→∅

k d_p r o t·P Z

R10. Transcription of LacI

∅→X

\(a0\_tr+\frac {a\_tr\cdot KM^{n}}{KM^{n}+(PZ)^{n}}\)

R11. Transcription of TetR

∅→Y

\(a0\_tr+\frac {a\_tr\cdot KM^{n}}{KM^{n}+(PX)^{n}}\)

R12. Transcription of CI

∅→Z

\(a0\_tr+\frac {a\_tr\cdot KM^{n}}{KM^{n}+(PY)^{n}}\)