From: DiffLogo: a comparative visualization of sequence motifs
Features | |||||
---|---|---|---|---|---|
Tools | Alphabet | Input format | Comparison | Clustering | Extensible |
seqLogo | DNA | matrix | uniform | - | - |
iceLogo | DNA/RNA, proteins | sequences | average | - | - |
MotifStack | any | matrix | uniform | hclust | - |
STAMP | DNA | sequences, matrix | uniform | UPGMA/SOTA | - |
Two Sample Logo | DNA/RNA, proteins | sequences | position-specific | - | - |
DiffLogo | any | sequences, matrix | position-specific | hclust, optimal leaf ordering | ✓ |