Table 3 Accuracy comparisons between the two-step piecemeal and the classic one-step imputation on the Simmental datasets
5-Fold cross validation | Independent testing | ||||||||
|---|---|---|---|---|---|---|---|---|---|
BaseProgram | Imputation | a c c 1 | a c c π | + | #Clusters | #TClusters | a c c 1 | a c c π | + |
6 K →50 K | 69.35 % | 70.81 % | 1.46 % | 100 | 100 | 60.68 % | 61.39 % | 0.71 % | |
Beagle | 6 K →660 K | 72.37 % | 74.92 % | 2.55 % | 800 | 800 | 66.00 % | 67.76 % | 1.76 % |
50 K →660 K | 86.61 % | 88.89 % | 2.28 % | 1000 | 1000 | 72.83 % | 74.11 % | 1.29 % | |
6 K →50 K | 75.95 % | 76.70 % | 0.75 % | 55 | 55 | 61.87 % | 62.16 % | 0.29 % | |
FImpute | 6 K →660 K | 79.11 % | 80.11 % | 1.00 % | 1000 | 1000 | 68.43 % | 68.95 % | 0.52 % |
50 K →660 K | 90.31 % | 90.74 % | 0.43 % | 1000 | 1999 | 77.11 % | 77.33 % | 0.22 % | |