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Table 3 The number of times that each alignment tool contributed to generation of the best models

From: A large-scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11

Alignment tool # of times generating best models
TBM & FM domains TBM domains FM domains
HHSearch / HHSuite 49 41 8
RaptorX 13 10 3
MUSTER 7 5 2
HHblits 7 6 1
COMPASS 6 5 1
PSI-BLAST 2 2  
BLAST 1 1  
HMMer 1 1  
PRC 1 1  
FFAS 1 1  
  1. The numbers represent the number of times that each of the independent pairwise alignment tools excluding the alignment combination methods generated alignments leading to the creation of the best models for 75 TBM and 30 FM CASP11 domains. It is worth noting that the results of several versions of HHSearch used in the MULTICOM server are combined together