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Fig. 8 | BMC Bioinformatics

Fig. 8

From: PDB-Explorer: a web-based interactive map of the protein data bank in shape space

Fig. 8

Similarity search result for triose phosphate isomerase (TIM) dimer, 1YPI. a Frequency histogram of CBD3DP between all of the structures in PDB and 1YPI (blue), and all of the TIM dimers and 1YPI (red). b Deviation of bit values of 4FF7, 8TIM and 4GNJ to the reference 1YPI. c Comparison of the structures of reference 1YPI and rank2, rank10 and rank 321 analogs retrieved from similarity search. The positively charged atoms are shown as blue spheres and negatively charged atoms are shown as red spheres for 1YPI and 4GNJ

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