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Table 4 1-to-1 comparison between GOTA (PM) and GOCat (T+A)

From: GOTA: GO term annotation of biomedical literature

Metric a

GOTA = GOCat b

GOTA > GOCat c

GOTA < GOCat d

i P 1

0.44 (0.13)

0.36 (0.15)

0.20 (0.07)

i R 10

0.29 (0.16)

0.41 (0.15)

0.30 (0.07)

h R 10

0.41 (0.25)

0.36 (0.17)

0.23 (0.09)

M R R 10

0.42 (0.13)

0.37 (0.16)

0.20 (0.07)

R 10

0.61 (0.21)

0.25 (0.17)

0.13 (0.08)

  1. aMetrics definitions are in the “Evaluation metrics” section
  2. bFraction of publications on which GOTA and GOCat get exactly the same score. In parenthesis, fraction of publications on which the score is equal to 1 (maximum)
  3. cFraction of publications on which GOTA gets a score strictly higher than GOCat’s. In parenthesis, fraction of publications on which the score is equal to 1 (maximum)
  4. dFraction of publications on which GOCat gets a score strictly higher than GOTA’s. In parenthesis, fraction of publications on which the score is equal to 1 (maximum)