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Table 1 Spearman correlation results of eight non-abundance estimation normalization methods

From: Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data

Accession RC UQ Med TMM DESeq Q RPKM ERPKM
Reads with length of 35 nucleotides, p-value < 2.2e-16
SRX016359 0.563 0.561 0.563 0.563 0.563 0.563 0.560 0.560
SRX016366 0.562 0.560 0.563 0.563 0.563 0.562 0.559 0.559
SRX016367 0.622 0.621 0.622 0.622 0.622 0.622 0.639 0.639
SRX016368 0.621 0.620 0.622 0.621 0.621 0.621 0.639 0.639
SRX016369 0.626 0.625 0.626 0.626 0.626 0.626 0.646 0.646
SRX016370 0.635 0.635 0.635 0.635 0.635 0.635 0.657 0.657
SRX016371 0.632 0.631 0.632 0.632 0.630 0.632 0.652 0.651
SRX016372 0.641 0.641 0.641 0.6401 0.641 0.640 0.662 0.662
Reads with length of 76 nucleotides, p-value < 2.2e-16
SRX080222 0.695       0.653 0.650
SRX080223 0.686       0.642 0.640
SRX080224 0.713       0.695 0.693
SRX080225 0.712       0.693 0.692
Simulated-HBR 0.670 0.669 0.670 0.670 0.670 0.670 0.624 0.621
Simulated-UHR 0.708 0.708 0.707 0.708 0.708 0.708 0.685 0.683