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Table 1 Spearman correlation results of eight non-abundance estimation normalization methods

From: Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data

Accession

RC

UQ

Med

TMM

DESeq

Q

RPKM

ERPKM

Reads with length of 35 nucleotides, p-value < 2.2e-16

SRX016359

0.563

0.561

0.563

0.563

0.563

0.563

0.560

0.560

SRX016366

0.562

0.560

0.563

0.563

0.563

0.562

0.559

0.559

SRX016367

0.622

0.621

0.622

0.622

0.622

0.622

0.639

0.639

SRX016368

0.621

0.620

0.622

0.621

0.621

0.621

0.639

0.639

SRX016369

0.626

0.625

0.626

0.626

0.626

0.626

0.646

0.646

SRX016370

0.635

0.635

0.635

0.635

0.635

0.635

0.657

0.657

SRX016371

0.632

0.631

0.632

0.632

0.630

0.632

0.652

0.651

SRX016372

0.641

0.641

0.641

0.6401

0.641

0.640

0.662

0.662

Reads with length of 76 nucleotides, p-value < 2.2e-16

SRX080222

0.695

     

0.653

0.650

SRX080223

0.686

     

0.642

0.640

SRX080224

0.713

     

0.695

0.693

SRX080225

0.712

     

0.693

0.692

Simulated-HBR

0.670

0.669

0.670

0.670

0.670

0.670

0.624

0.621

Simulated-UHR

0.708

0.708

0.707

0.708

0.708

0.708

0.685

0.683